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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1029
total RNA-seq
832
ChIP-seq
221
ATAC-seq
172
DNase-seq
168
single cell RNA-seq
28
snATAC-seq
25
WGBS
22
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
172
DNA accessibility
Date released
159
June, 2019
9
November, 2018
2
August, 2017
2
October, 2019
Available data
171
bam
171
bed narrowPeak
171
bigBed narrowPeak
171
bigWig
170
bed bed3+
170
bed broadPeak
170
bigBed broadPeak
10
fastq
Organism
172
Homo sapiens
Biosample type
172
tissue
23
primary cell
2
cell line
1
in vitro differentiated cells
Organ
68
kidney
35
limb
31
musculature of body
27
brain
27
heart
18
ureter
7
pancreas
5
blood vessel
vasculature
4
artery
4
liver
3
eye
2
adipose tissue
2
connective tissue
2
nerve
1
spleen
Project
172
AMP
Genome assembly (visualization)
171
GRCh38
155
hg19
Lab
172
AMP-T2D consortium
Audit category:
inconsistent ontology term
organ_slims!
vasculature
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
172 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
12
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