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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1010
total RNA-seq
834
ChIP-seq
202
ATAC-seq
168
single cell RNA-seq
155
DNase-seq
87
RNA microarray
28
snATAC-seq
25
WGBS
24
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1194
Transcription
834
DNA binding
389
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
574
histone modification
573
histone
306
narrow histone mark
267
broad histone mark
171
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
223
August, 2021
216
October, 2019
193
May, 2020
142
June, 2019
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
70
July, 2019
65
May, 2019
60
February, 2023
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
26
May, 2022
26
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1802
bam
1664
bigWig
1062
tsv
846
bed narrowPeak
481
bigBed narrowPeak
377
fastq
238
tagAlign
190
bed broadPeak
182
bed bed3+
157
txt
153
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2577
Homo sapiens
Biosample type
2586
tissue
1051
primary cell
596
cell line
394
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
321
liver
313
heart
299
kidney
265
brain
158
bone element
133
blood vessel
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2489
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1736
GRCh38
1647
hg19
Lab
2274
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
ureter
lab.title!
Karen Mohlke, UNC
BIOSAMPLE
ASSAY
2586 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
71
68
1
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
147
145
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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