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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
276
ChIP-seq
168
single cell RNA-seq
153
ATAC-seq
121
total RNA-seq
87
RNA microarray
23
pCHi-C
18
snATAC-seq
15
Hi-C
11
RRBS
10
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
289
Transcription
276
DNA binding
172
DNA accessibility
21
DNA methylation
15
3D chromatin structure
Target of assay
171
control
106
histone
106
histone modification
56
narrow histone mark
50
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
223
August, 2021
106
August, 2017
101
February, 2021
77
October, 2019
47
September, 2023
42
February, 2023
29
October, 2018
27
March, 2020
25
November, 2017
23
May, 2020
22
February, 2020
22
May, 2022
21
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
13
July, 2019
12
December, 2017
11
May, 2019
9
October, 2017
6
September, 2017
5
March, 2019
4
December, 2018
4
July, 2018
4
November, 2020
3
December, 2019
3
November, 2018
1
August, 2022
1
January, 2019
Available data
1796
bam
bigWig
1062
tsv
866
bed narrowPeak
499
bigBed narrowPeak
353
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
151
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
887
Homo sapiens
Biosample type
890
tissue
443
primary cell
125
cell line
93
in vitro differentiated cells
7
stem cell
Organ
208
kidney
156
heart
100
bone element
96
liver
81
pancreas
66
connective tissue
65
adipose tissue
63
blood vessel
63
brain
vasculature
53
eye
46
artery
31
limb
25
musculature of body
20
lung
16
skeleton
15
epithelium
12
nerve
9
spleen
5
gonad
5
ovary
2
intestine
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
822
AMP
47
KPMP
19
LungMap
2
T1D
Genome assembly (visualization)
112
GRCh38
89
hg19
Lab
651
AMP-T2D consortium
142
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
88
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
organ_slims!
vasculature
lab.title!
Kyle Gaulton, UCSD
files.file_type!
bigWig
BIOSAMPLE
ASSAY
890 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
7
64
75
49
6
1
1
islet of Langerhans
42
36
21
4
1
3
1
4
liver
63
1
20
1
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
35
3
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