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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1004
total RNA-seq
817
ChIP-seq
183
ATAC-seq
174
single cell RNA-seq
173
DNase-seq
87
RNA microarray
25
WGBS
18
snATAC-seq
16
small RNA-seq
11
RRBS
9
Hi-C
4
FAIRE-seq
4
MeRIP-seq
4
pCHi-C
3
snDrop-seq
Assay category
1194
Transcription
817
DNA binding
378
DNA accessibility
36
DNA methylation
9
3D chromatin structure
Target of assay
560
histone modification
559
histone
302
narrow histone mark
257
broad histone mark
168
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
223
August, 2021
216
October, 2019
193
May, 2020
160
June, 2019
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
70
July, 2019
65
May, 2019
48
December, 2017
47
September, 2023
42
February, 2023
42
May, 2022
40
May, 2024
40
November, 2019
38
May, 2021
March, 2020
26
November, 2018
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1773
bam
1678
bigWig
1036
tsv
852
bed narrowPeak
493
bigBed narrowPeak
336
fastq
224
tagAlign
204
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
151
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
6
csv
5
bed bed3
4
hic
3
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
2523
Homo sapiens
Biosample type
2532
tissue
812
primary cell
580
cell line
339
in vitro differentiated cells
6
stem cell
Organ
545
connective tissue
486
adipose tissue
440
pancreas
358
liver
306
heart
299
kidney
247
brain
158
bone element
130
blood vessel
vasculature
122
limb
77
musculature of body
73
artery
56
eye
43
nerve
23
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
2466
AMP
47
KPMP
19
LungMap
Genome assembly (visualization)
1732
GRCh38
1638
hg19
Lab
2233
AMP-T2D consortium
142
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
lab.title!
Kyle Gaulton, UCSD
month_released!
October, 2017
March, 2020
BIOSAMPLE
ASSAY
2532 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
small RNA-seq
RRBS
Hi-C
FAIRE-seq
MeRIP-seq
pCHi-C
snDrop-seq
tissue
islet of Langerhans
279
69
36
6
1
1
1
3
1
4
4
adipose tissue
382
2
3
3
liver
166
145
20
1
2
3
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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