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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
898
total RNA-seq
466
ChIP-seq
156
DNase-seq
112
ATAC-seq
16
small RNA-seq
10
Hi-C
9
RRBS
4
FAIRE-seq
1
snATAC-seq
Assay category
914
Transcription
466
DNA binding
273
DNA accessibility
10
3D chromatin structure
9
DNA methylation
Target of assay
378
histone modification
377
histone
220
narrow histone mark
157
broad histone mark
85
transcription factor
19
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
180
August, 2017
170
May, 2020
144
June, 2019
142
October, 2019
116
July, 2018
65
April, 2019
55
July, 2019
54
May, 2019
45
October, 2018
40
November, 2019
39
May, 2022
38
May, 2021
36
December, 2017
33
February, 2023
17
November, 2018
16
March, 2020
October, 2017
6
April, 2018
6
January, 2019
6
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
1
May, 2023
Available data
1567
bam
1565
bigWig
914
tsv
700
bed narrowPeak
425
bigBed narrowPeak
281
fastq
187
bed broadPeak
184
bed bed3+
155
bigBed broadPeak
99
tagAlign
10
hic
9
bed bedMethyl
9
bigBed bedMethyl
8
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
txt
Organism
1666
Homo sapiens
Biosample type
1672
tissue
597
primary cell
466
cell line
297
in vitro differentiated cells
3
stem cell
Organ
481
connective tissue
423
adipose tissue
408
pancreas
268
liver
137
brain
113
heart
96
limb
92
kidney
70
blood vessel
70
bone element
vasculature
61
musculature of body
31
nerve
30
eye
27
artery
18
ureter
13
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
1670
AMP
2
T1D
Genome assembly (visualization)
1740
GRCh38
1672
hg19
Lab
1630
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
22
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
month_released!
October, 2017
BIOSAMPLE
ASSAY
1672 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
266
31
1
41
2
1
1
liver
147
83
2
20
1
1
1
bone tissue
58
heart left ventricle
3
29
3
2
1
1
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