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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
246
ChIP-seq
22
total RNA-seq
15
ATAC-seq
4
pCHi-C
2
DNase-seq
1
Hi-C
Assay category
246
DNA binding
22
Transcription
17
DNA accessibility
1
3D chromatin structure
Target of assay
180
histone
180
histone modification
136
narrow histone mark
51
control
44
broad histone mark
15
transcription factor
11
RNA binding protein
Date released
545
February, 2021
284
August, 2017
223
August, 2021
216
October, 2019
193
May, 2020
160
June, 2019
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
70
July, 2019
66
May, 2022
65
May, 2019
60
February, 2023
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
26
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
234
bam
184
bigWig
175
bed narrowPeak
72
bigBed narrowPeak
58
fastq
49
tagAlign
8
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
290
Homo sapiens
Biosample type
290
tissue
30
cell line
15
primary cell
8
in vitro differentiated cells
Organ
86
brain
69
limb
54
pancreas
42
nerve
26
artery
26
blood vessel
vasculature
25
connective tissue
24
adipose tissue
21
eye
8
heart
6
liver
4
gonad
4
kidney
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
Project
290
AMP
Genome assembly (visualization)
187
hg19
185
GRCh38
Lab
290
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent control read length
organ_slims!
vasculature
BIOSAMPLE
ASSAY
290 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
DNase-seq
Hi-C
tissue
islet of Langerhans
21
14
13
4
tibial nerve
35
4
1
2
body of pancreas
33
endocrine pancreas
16
subcutaneous adipose tissue
12
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