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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
941
total RNA-seq
518
ChIP-seq
220
ATAC-seq
171
DNase-seq
168
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
16
WGBS
16
small RNA-seq
15
Hi-C
6
RRBS
3
FAIRE-seq
3
snDrop-seq
2
MeRIP-seq
Assay category
1125
Transcription
518
DNA binding
422
DNA accessibility
22
DNA methylation
15
3D chromatin structure
Target of assay
450
histone
450
histone modification
256
narrow histone mark
194
broad histone mark
control
68
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
August, 2017
223
August, 2021
194
October, 2019
170
May, 2020
160
June, 2019
120
July, 2018
70
July, 2019
70
November, 2017
66
April, 2019
66
May, 2022
60
February, 2023
54
May, 2019
47
September, 2023
45
October, 2018
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
36
December, 2017
23
November, 2018
22
February, 2020
20
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
6
April, 2018
6
January, 2019
5
March, 2019
3
December, 2018
3
December, 2019
2
January, 2018
2
November, 2020
1
August, 2022
Available data
1524
bigWig
1511
bam
973
tsv
818
bed narrowPeak
477
bigBed narrowPeak
182
bed broadPeak
172
bed bed3+
171
bigBed broadPeak
157
txt
147
fastq
135
tagAlign
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2216
Homo sapiens
Biosample type
2218
tissue
974
primary cell
515
cell line
297
in vitro differentiated cells
9
stem cell
Organ
472
connective tissue
413
adipose tissue
338
pancreas
297
heart
293
kidney
272
liver
240
brain
158
bone element
117
blood vessel
vasculature
105
limb
66
artery
56
eye
55
musculature of body
32
nerve
20
lung
18
ureter
17
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2121
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1594
GRCh38
1503
hg19
Lab
1868
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
organ_slims!
vasculature
target.investigated_as!
control
month_released!
August, 2017
BIOSAMPLE
ASSAY
2218 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snDrop-seq
MeRIP-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
209
23
68
7
4
3
1
2
liver
167
65
20
2
1
1
1
1
kidney
49
21
75
13
64
6
1
1
1
bone element
84
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