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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1030
total RNA-seq
222
ATAC-seq
173
DNase-seq
168
single cell RNA-seq
91
ChIP-seq
87
RNA microarray
28
snATAC-seq
25
WGBS
24
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
MeRIP-seq
Assay category
1214
Transcription
427
DNA accessibility
91
DNA binding
36
DNA methylation
15
3D chromatin structure
Target of assay
histone modification
573
histone
306
narrow histone mark
267
broad histone mark
control
91
transcription factor
25
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
223
August, 2021
160
June, 2019
143
May, 2020
131
August, 2017
120
July, 2018
70
July, 2019
66
May, 2022
60
February, 2023
47
September, 2023
44
October, 2019
40
May, 2021
40
November, 2019
35
March, 2020
31
December, 2017
23
November, 2018
22
February, 2020
19
April, 2020
15
May, 2023
15
October, 2018
8
January, 2021
8
October, 2017
6
April, 2018
6
April, 2019
5
March, 2019
5
May, 2024
3
December, 2018
3
December, 2019
2
January, 2018
2
November, 2020
1
August, 2022
1
May, 2019
Available data
1257
bam
1234
bigWig
1062
tsv
418
bed narrowPeak
241
bigBed narrowPeak
236
fastq
185
bed bed3+
173
bed broadPeak
171
bigBed broadPeak
157
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1897
Homo sapiens
Biosample type
1899
tissue
800
primary cell
477
cell line
245
in vitro differentiated cells
7
stem cell
Organ
490
connective tissue
432
adipose tissue
403
pancreas
273
kidney
245
liver
202
heart
158
bone element
63
blood vessel
vasculature
56
brain
56
limb
54
eye
53
musculature of body
46
artery
20
lung
18
ureter
16
skeleton
15
epithelium
11
spleen
8
nerve
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1804
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1311
GRCh38
1298
hg19
Lab
1584
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
organ_slims!
vasculature
target.investigated_as!
control
histone modification
BIOSAMPLE
ASSAY
1899 results
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Clear Filters
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
ChIP-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snDrop-seq
MeRIP-seq
tissue
islet of Langerhans
298
68
1
7
7
4
3
1
1
2
adipose tissue
382
3
3
1
liver
167
20
2
1
37
3
1
1
1
1
kidney
49
75
13
64
1
6
1
1
1
bone element
84
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