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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
61
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
399
Transcription
61
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
12
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
45
August, 2017
23
October, 2018
10
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
428
bam
411
bigWig
399
tsv
31
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
475
Homo sapiens
Biosample type
476
tissue
2
primary cell
1
in vitro differentiated cells
Organ
535
connective tissue
495
pancreas
476
adipose tissue
361
liver
299
kidney
273
heart
261
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
476
AMP
Genome assembly (visualization)
412
hg19
410
GRCh38
Lab
476
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
476 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
visceral abdominal adipose tissue
3
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