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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
total RNA-seq
146
ChIP-seq
44
ATAC-seq
8
WGBS
7
DNase-seq
6
single cell RNA-seq
2
pCHi-C
2
small RNA-seq
1
Hi-C
1
RNA microarray
Assay category
412
Transcription
146
DNA binding
51
DNA accessibility
8
DNA methylation
1
3D chromatin structure
Target of assay
86
histone
86
histone modification
56
broad histone mark
40
control
30
narrow histone mark
20
transcription factor
8
RNA binding protein
Date released
386
February, 2021
57
August, 2017
50
May, 2019
36
February, 2023
27
October, 2019
23
October, 2018
17
July, 2019
7
August, 2021
5
February, 2020
4
June, 2019
4
March, 2020
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
527
bam
493
bigWig
413
tsv
113
bed narrowPeak
72
bigBed narrowPeak
43
fastq
11
bed bed3+
8
bed broadPeak
8
tagAlign
7
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hic
Organism
620
Homo sapiens
Biosample type
621
tissue
66
cell line
39
primary cell
1
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
621
AMP
Genome assembly (visualization)
527
GRCh38
494
hg19
Lab
621
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
621 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
single cell RNA-seq
pCHi-C
small RNA-seq
Hi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
coronary artery
1
5
36
2
subcutaneous abdominal adipose tissue
36
3
tibial artery
1
23
1
2
aorta
1
13
2
4
1
1
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