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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
457
total RNA-seq
102
ChIP-seq
43
ATAC-seq
6
DNase-seq
6
WGBS
2
single cell RNA-seq
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
461
Transcription
102
DNA binding
49
DNA accessibility
6
DNA methylation
Target of assay
53
histone
53
histone modification
34
broad histone mark
31
control
19
narrow histone mark
18
transcription factor
6
RNA binding protein
Date released
444
February, 2021
57
August, 2017
36
February, 2023
28
October, 2019
23
October, 2018
11
July, 2019
5
May, 2019
4
February, 2020
3
August, 2021
3
June, 2019
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
532
bam
508
bigWig
461
tsv
75
bed narrowPeak
43
fastq
35
bigBed narrowPeak
10
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
619
Homo sapiens
Biosample type
620
tissue
97
in vitro differentiated cells
66
cell line
41
primary cell
1
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
620
AMP
Genome assembly (visualization)
542
GRCh38
509
hg19
Lab
620
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
620 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
coronary artery
1
5
36
2
subcutaneous abdominal adipose tissue
36
3
tibial artery
1
23
1
2
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