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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
39
ATAC-seq
7
total RNA-seq
6
DNase-seq
6
single cell RNA-seq
4
WGBS
2
pCHi-C
1
Hi-C
Assay category
93
DNA binding
45
DNA accessibility
13
Transcription
4
DNA methylation
1
3D chromatin structure
Target of assay
60
histone
60
histone modification
40
broad histone mark
24
control
20
narrow histone mark
9
transcription factor
3
RNA binding protein
3
other context
3
other post-translational modification
Date released
50
May, 2019
35
February, 2023
26
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
July, 2019
6
August, 2021
4
March, 2020
3
February, 2020
3
June, 2019
1
October, 2017
Available data
114
bed narrowPeak
111
bam
86
bigWig
75
bigBed narrowPeak
24
fastq
15
tsv
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hic
Organism
158
Homo sapiens
Biosample type
158
tissue
66
cell line
31
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
158
AMP
Genome assembly (visualization)
121
GRCh38
84
hg19
Lab
158
AMP-T2D consortium
BIOSAMPLE
ASSAY
158 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
tissue
coronary artery
5
36
1
2
tibial artery
23
1
1
2
spleen
20
1
1
2
1
aorta
13
1
4
2
1
1
ascending aorta
16
2
1
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