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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
455
total RNA-seq
74
ChIP-seq
6
ATAC-seq
6
WGBS
2
small RNA-seq
1
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
457
Transcription
74
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
33
histone
33
histone modification
24
control
20
broad histone mark
17
transcription factor
13
narrow histone mark
5
RNA binding protein
Date released
444
February, 2021
57
August, 2017
23
October, 2018
10
July, 2019
2
February, 2020
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
497
bam
480
bigWig
457
tsv
43
fastq
12
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
5
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bigBed broadPeak
Organism
545
Homo sapiens
Biosample type
546
tissue
97
in vitro differentiated cells
22
primary cell
1
stem cell
Organ
546
connective tissue
501
pancreas
487
adipose tissue
361
liver
286
heart
240
brain
231
kidney
158
bone element
130
blood vessel
130
vasculature
90
limb
71
artery
53
eye
50
musculature of body
43
nerve
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
546
AMP
Genome assembly (visualization)
481
hg19
479
GRCh38
Lab
546
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
spleen
month_released!
June, 2019
BIOSAMPLE
ASSAY
546 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
1
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