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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ChIP-seq
66
ATAC-seq
26
total RNA-seq
8
DNase-seq
6
single cell RNA-seq
5
pCHi-C
2
WGBS
1
Hi-C
Assay category
75
DNA binding
74
DNA accessibility
32
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
56
histone
56
histone modification
36
broad histone mark
20
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
66
February, 2023
50
May, 2019
47
October, 2019
7
July, 2019
6
August, 2021
6
June, 2019
4
February, 2020
3
March, 2020
Available data
130
bed narrowPeak
90
bam
73
bigWig
65
bigBed narrowPeak
19
tsv
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
189
Homo sapiens
Biosample type
189
tissue
66
cell line
36
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
189
AMP
Genome assembly (visualization)
108
GRCh38
100
hg19
Lab
189
AMP-T2D consortium
BIOSAMPLE
ASSAY
189 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
single cell RNA-seq
pCHi-C
WGBS
Hi-C
tissue
coronary artery
5
36
1
2
tibial artery
23
1
1
2
aorta
13
1
4
1
2
1
islet of Langerhans
2
1
14
4
retina
15
3
3
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