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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
DNase-seq
31
ChIP-seq
29
ATAC-seq
24
total RNA-seq
6
Hi-C
5
pCHi-C
4
RRBS
1
WGBS
1
single cell RNA-seq
1
small RNA-seq
1
snATAC-seq
Assay category
65
DNA accessibility
31
DNA binding
26
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
4
control
Date released
35
June, 2019
31
February, 2023
26
August, 2017
21
October, 2019
7
July, 2019
7
May, 2019
5
March, 2020
3
February, 2020
2
May, 2022
1
January, 2018
Available data
81
bed narrowPeak
60
bigWig
48
bed broadPeak
47
bam
41
bigBed narrowPeak
36
bed bed3+
35
bigBed broadPeak
15
tagAlign
12
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
138
Homo sapiens
Biosample type
138
tissue
19
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
138
AMP
Genome assembly (visualization)
91
hg19
45
GRCh38
Lab
138
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
138 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
RRBS
WGBS
single cell RNA-seq
small RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
4
1
1
1
islet of Langerhans
2
1
14
4
muscle of leg
13
7
1
retina
3
15
3
muscle of arm
17
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