Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
83
ChIP-seq
39
ATAC-seq
27
DNase-seq
12
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
106
Transcription
83
DNA binding
66
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
16
control
7
transcription factor
5
RNA binding protein
Date released
92
August, 2021
57
April, 2019
36
February, 2023
27
June, 2019
21
May, 2019
20
July, 2019
8
October, 2019
7
March, 2020
February, 2020
2
May, 2021
Available data
133
bed narrowPeak
132
bam
117
bigWig
108
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
270
Homo sapiens
Biosample type
270
tissue
66
cell line
13
primary cell
1
in vitro differentiated cells
Organ
545
connective tissue
504
pancreas
486
adipose tissue
360
liver
299
kidney
270
heart
253
brain
158
bone element
130
blood vessel
130
vasculature
119
limb
80
musculature of body
71
artery
55
eye
42
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
270
AMP
Genome assembly (visualization)
151
GRCh38
113
hg19
Lab
270
AMP-T2D consortium
month_released!
February, 2020
BIOSAMPLE
ASSAY
270 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
35
2
3
3
4
1
1
1
coronary artery
5
36
2
heart
1
14
18
4
1
1
1
heart right ventricle
17
13
1
1
2
1
1
right cardiac atrium
18
6
1
1
+ See 9 more…
See all biosamples
Download