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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
39
ATAC-seq
27
DNase-seq
12
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
123
DNA binding
106
Transcription
66
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
21
May, 2019
20
July, 2019
8
October, 2019
7
March, 2020
February, 2020
2
May, 2021
Available data
173
bed narrowPeak
157
bigWig
132
bam
108
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
310
Homo sapiens
Biosample type
310
tissue
66
cell line
13
primary cell
1
in vitro differentiated cells
Organ
545
connective tissue
504
pancreas
486
adipose tissue
360
liver
310
heart
299
kidney
253
brain
158
bone element
130
blood vessel
130
vasculature
119
limb
80
musculature of body
71
artery
55
eye
42
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
urinary bladder
Project
310
AMP
Genome assembly (visualization)
191
GRCh38
113
hg19
Lab
270
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
month_released!
February, 2020
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
310 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
2
3
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
36
2
heart
14
1
18
4
1
1
1
heart right ventricle
13
17
1
1
2
1
1
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