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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
ChIP-seq
93
single cell RNA-seq
39
ATAC-seq
27
DNase-seq
12
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
107
DNA binding
106
Transcription
66
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
47
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
20
July, 2019
15
May, 2019
8
October, 2019
7
March, 2020
February, 2020
2
May, 2021
Available data
173
bed narrowPeak
157
bigWig
116
bam
108
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
294
Homo sapiens
Biosample type
294
tissue
64
cell line
11
primary cell
1
in vitro differentiated cells
Organ
521
connective tissue
475
pancreas
462
adipose tissue
314
liver
294
heart
293
kidney
228
brain
158
bone element
114
blood vessel
114
vasculature
102
limb
76
musculature of body
64
artery
55
eye
31
nerve
20
lung
18
ureter
17
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
294
AMP
Genome assembly (visualization)
191
GRCh38
113
hg19
Lab
254
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
month_released!
February, 2020
target.investigated_as!
control
BIOSAMPLE
ASSAY
294 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
29
18
2
3
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
3
36
2
heart
12
1
18
4
1
1
1
heart right ventricle
11
17
1
1
2
1
1
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