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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
14
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
123
DNA binding
108
Transcription
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
21
May, 2019
16
July, 2019
8
October, 2019
7
March, 2020
2
February, 2020
2
May, 2021
1
February, 2023
Available data
126
bigWig
110
tsv
107
bed narrowPeak
101
bam
61
bigBed narrowPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
246
Homo sapiens
Biosample type
246
tissue
58
cell line
10
primary cell
1
in vitro differentiated cells
Organ
539
connective tissue
480
adipose tissue
423
pancreas
336
liver
247
heart
233
brain
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
246
AMP
Genome assembly (visualization)
125
GRCh38
84
hg19
Lab
206
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
organ_slims!
musculature of body
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
246 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
4
1
1
1
left cardiac atrium
40
18
heart right ventricle
13
17
1
2
1
1
right cardiac atrium
6
18
1
1
heart
14
1
4
1
1
1
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