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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
ChIP-seq
93
single cell RNA-seq
39
ATAC-seq
27
DNase-seq
15
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
109
Transcription
102
DNA binding
66
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
82
histone
82
histone modification
50
broad histone mark
32
narrow histone mark
10
control
10
transcription factor
8
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
May, 2019
20
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
158
bed narrowPeak
142
bigWig
111
bam
111
tsv
73
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
292
Homo sapiens
Biosample type
292
tissue
66
cell line
13
primary cell
1
in vitro differentiated cells
Organ
547
connective tissue
503
pancreas
488
adipose tissue
361
liver
299
kidney
292
heart
237
brain
158
bone element
115
limb
83
blood vessel
83
vasculature
75
musculature of body
68
artery
56
eye
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
292
AMP
Genome assembly (visualization)
176
GRCh38
98
hg19
Lab
252
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
organ_slims!
nerve
month_released!
May, 2019
BIOSAMPLE
ASSAY
292 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
2
3
3
4
1
1
1
left cardiac atrium
40
18
1
heart
14
1
18
4
1
1
1
coronary artery
36
2
1
heart right ventricle
13
17
1
1
2
1
1
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