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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
39
ATAC-seq
28
ChIP-seq
27
DNase-seq
15
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
109
Transcription
66
DNA accessibility
28
DNA binding
9
DNA methylation
3
3D chromatin structure
Target of assay
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
36
February, 2023
27
June, 2019
20
July, 2019
15
April, 2019
8
May, 2019
7
March, 2020
5
May, 2024
3
February, 2020
3
October, 2019
2
May, 2021
Available data
111
tsv
78
bed narrowPeak
73
bam
62
bigWig
34
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
218
Homo sapiens
Biosample type
218
tissue
66
cell line
11
primary cell
1
in vitro differentiated cells
Organ
514
connective tissue
456
adipose tissue
432
pancreas
292
liver
279
kidney
218
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
218
AMP
Genome assembly (visualization)
97
GRCh38
53
hg19
Lab
213
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
organ_slims!
nerve
target.investigated_as!
histone
BIOSAMPLE
ASSAY
218 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
2
11
3
3
4
1
1
1
coronary artery
36
3
2
1
heart
1
2
18
4
1
1
1
heart right ventricle
17
2
1
1
2
1
1
left cardiac atrium
18
5
1
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