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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ChIP-seq
95
single cell RNA-seq
40
ATAC-seq
29
DNase-seq
16
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
112
Transcription
106
DNA binding
69
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
78
histone
78
histone modification
51
broad histone mark
27
narrow histone mark
21
control
7
transcription factor
5
RNA binding protein
Date released
94
August, 2021
57
April, 2019
36
February, 2023
34
October, 2019
27
June, 2019
21
May, 2019
20
July, 2019
7
March, 2020
4
February, 2020
2
May, 2021
Available data
158
bam
154
bed narrowPeak
138
bigWig
114
tsv
108
bigBed narrowPeak
29
bed bed3+
29
bed broadPeak
29
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
302
Homo sapiens
Biosample type
302
tissue
66
cell line
13
primary cell
1
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
302
AMP
Genome assembly (visualization)
172
GRCh38
134
hg19
Lab
302
AMP-T2D consortium
BIOSAMPLE
ASSAY
302 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
2
3
3
4
1
1
1
coronary artery
5
36
2
1
heart
14
1
18
4
1
1
1
heart right ventricle
13
17
1
1
2
1
1
tibial artery
23
1
2
1
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