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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
84
RNA microarray
83
ChIP-seq
77
total RNA-seq
51
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
171
Transcription
83
DNA binding
78
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
16
control
7
transcription factor
5
RNA binding protein
Date released
150
February, 2021
92
August, 2021
57
April, 2019
44
February, 2023
27
June, 2019
21
May, 2019
20
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
198
bam
175
bigWig
169
tsv
141
bed narrowPeak
88
bigBed narrowPeak
88
txt
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
4
bed bed3
3
bedpe bed3+
3
hic
Organism
431
Homo sapiens
Biosample type
431
tissue
66
cell line
14
primary cell
1
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
431
AMP
Genome assembly (visualization)
217
GRCh38
183
hg19
Lab
431
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
BIOSAMPLE
ASSAY
431 results
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single cell RNA-seq
RNA microarray
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
bone element
84
heart left ventricle
18
35
3
2
3
4
1
1
1
bone tissue
58
coronary artery
5
1
36
2
heart
1
14
4
18
1
1
1
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