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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
50
total RNA-seq
27
ChIP-seq
3
snDrop-seq
2
RNA microarray
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
DNA accessibility
115
Transcription
27
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
58
August, 2021
47
September, 2023
23
April, 2019
8
February, 2021
4
October, 2019
3
December, 2019
3
July, 2019
3
May, 2023
Available data
62
txt
29
bam
22
bigWig
20
bed narrowPeak
18
bigBed narrowPeak
12
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
149
Homo sapiens
Biosample type
149
tissue
24
primary cell
18
cell line
Organ
539
connective tissue
480
adipose tissue
423
pancreas
336
liver
233
brain
207
heart
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
48
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
102
AMP
47
KPMP
Genome assembly (visualization)
24
hg19
22
GRCh38
Lab
61
Katalin Susztak, Upenn
47
KPMP
41
AMP-T2D consortium
Audit category:
7
audit script error
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
149 results
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single cell RNA-seq
total RNA-seq
ChIP-seq
snDrop-seq
RNA microarray
Hi-C
RRBS
small RNA-seq
tissue
kidney
64
49
27
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
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