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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
6
Hi-C
5
total RNA-seq
4
RRBS
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
small RNA-seq
Assay category
DNA accessibility
29
DNA binding
7
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
26
August, 2017
7
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
1
May, 2022
Available data
24
bigWig
19
bed narrowPeak
15
tagAlign
13
bed broadPeak
12
bam
7
tsv
6
bigBed narrowPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
48
Homo sapiens
Biosample type
48
tissue
13
primary cell
Organ
539
connective tissue
480
adipose tissue
423
pancreas
336
liver
233
brain
207
heart
149
kidney
146
bone element
90
blood vessel
90
vasculature
78
limb
48
musculature of body
40
nerve
32
artery
25
eye
23
spleen
10
lung
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
48
AMP
Genome assembly (visualization)
27
hg19
10
GRCh38
Lab
48
AMP-T2D consortium
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
WGBS
pCHi-C
single cell RNA-seq
small RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
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