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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
total RNA-seq
107
ChIP-seq
62
ATAC-seq
11
snATAC-seq
7
DNase-seq
4
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
291
Transcription
107
DNA binding
82
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
69
histone
69
histone modification
40
broad histone mark
29
control
29
narrow histone mark
11
transcription factor
7
RNA binding protein
2
nucleotide modification
Date released
137
August, 2017
120
July, 2018
51
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
9
March, 2020
8
January, 2021
7
November, 2018
6
April, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
3
October, 2019
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
419
bam
363
bigWig
275
tsv
203
fastq
122
bed narrowPeak
62
bigBed narrowPeak
20
bed broadPeak
17
bed bed3+
16
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
bigBed broadPeak
6
txt
3
bedpe bed3+
3
hic
1
bedpe
Organism
488
Homo sapiens
Biosample type
495
tissue
302
primary cell
92
cell line
3
in vitro differentiated cells
Organ
535
connective tissue
495
pancreas
476
adipose tissue
361
liver
299
kidney
273
heart
261
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
465
AMP
30
T1D
Genome assembly (visualization)
403
hg19
376
GRCh38
Lab
432
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
495 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
284
40
58
7
1
3
4
1
1
body of pancreas
3
35
4
4
2
2
pancreas
2
16
4
2
1
2
1
1
1
endocrine pancreas
16
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