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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
14
ChIP-seq
13
ATAC-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
62
Transcription
14
DNA accessibility
14
DNA binding
2
DNA methylation
Target of assay
8
control
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
150
February, 2021
9
November, 2018
8
February, 2023
7
December, 2018
1
January, 2019
1
March, 2020
1
October, 2017
Available data
88
txt
84
bam
68
bigWig
59
tsv
18
fastq
16
bed narrowPeak
7
bigBed narrowPeak
4
bed bed3
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
177
Homo sapiens
Biosample type
177
tissue
1
primary cell
Organ
514
connective tissue
456
adipose tissue
432
pancreas
292
liver
279
kidney
218
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
177
AMP
Genome assembly (visualization)
78
hg19
76
GRCh38
Lab
177
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
177 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
tissue
bone element
84
bone tissue
58
spleen
14
1
2
1
1
acetabular part of hip bone
1
1
ilium
1
1
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