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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
455
total RNA-seq
94
ChIP-seq
8
WGBS
7
ATAC-seq
3
DNase-seq
2
pCHi-C
2
small RNA-seq
1
RNA microarray
Assay category
457
Transcription
94
DNA binding
10
DNA accessibility
8
DNA methylation
Target of assay
39
histone
39
histone modification
32
control
24
broad histone mark
23
transcription factor
15
narrow histone mark
5
RNA binding protein
3
other context
3
other post-translational modification
Date released
444
February, 2021
57
August, 2017
23
October, 2018
10
July, 2019
10
November, 2018
7
December, 2018
7
January, 2019
2
February, 2020
2
March, 2020
2
October, 2017
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2019
Available data
522
bam
497
bigWig
458
tsv
67
fastq
27
bed narrowPeak
23
bigBed narrowPeak
8
tagAlign
7
bed bed3+
4
bed bedMethyl
4
bed broadPeak
4
bigBed bedMethyl
3
bigBed broadPeak
Organism
571
Homo sapiens
Biosample type
572
tissue
97
in vitro differentiated cells
39
primary cell
1
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
572
AMP
Genome assembly (visualization)
496
GRCh38
496
hg19
Lab
572
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
572 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
spleen
20
2
1
1
1
subcutaneous adipose tissue
7
12
1
1
1
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