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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
8
WGBS
7
ATAC-seq
3
DNase-seq
1
RNA microarray
1
total RNA-seq
Assay category
94
DNA binding
10
DNA accessibility
8
DNA methylation
1
Transcription
Target of assay
39
histone
39
histone modification
32
control
24
broad histone mark
23
transcription factor
15
narrow histone mark
5
RNA binding protein
3
other context
3
other post-translational modification
Date released
57
August, 2017
23
October, 2018
10
November, 2018
7
December, 2018
7
January, 2019
2
October, 2017
2
October, 2019
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2019
Available data
522
bam
497
bigWig
tsv
67
fastq
27
bed narrowPeak
23
bigBed narrowPeak
8
tagAlign
7
bed bed3+
4
bed bedMethyl
4
bed broadPeak
4
bigBed bedMethyl
3
bigBed broadPeak
Organism
113
Homo sapiens
Biosample type
114
tissue
92
in vitro differentiated cells
24
primary cell
Organ
287
kidney
242
brain
230
pancreas
207
liver
202
heart
119
blood vessel
119
vasculature
115
limb
100
bone element
90
connective tissue
89
adipose tissue
75
musculature of body
69
artery
51
eye
38
nerve
24
spleen
19
lung
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
114
AMP
Genome assembly (visualization)
42
GRCh38
42
hg19
Lab
114
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
tsv
BIOSAMPLE
ASSAY
114 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
RNA microarray
total RNA-seq
tissue
subcutaneous abdominal adipose tissue
36
3
spleen
20
2
1
1
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
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