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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
38
ATAC-seq
7
total RNA-seq
6
single cell RNA-seq
5
DNase-seq
WGBS
1
Hi-C
1
pCHi-C
Assay category
73
DNA binding
43
DNA accessibility
13
Transcription
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
narrow histone mark
16
control
3
RNA binding protein
3
transcription factor
Date released
50
May, 2019
35
February, 2023
26
October, 2019
6
August, 2021
5
July, 2019
3
February, 2020
3
June, 2019
3
March, 2020
Available data
100
bed narrowPeak
85
bam
69
bigWig
62
bigBed narrowPeak
14
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bedpe bed3+
1
hic
Organism
131
Homo sapiens
Biosample type
131
tissue
66
cell line
37
primary cell
Organ
541
connective tissue
501
pancreas
482
adipose tissue
357
liver
299
kidney
265
brain
265
heart
158
bone element
131
blood vessel
131
vasculature
121
limb
81
musculature of body
73
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
131
AMP
Genome assembly (visualization)
104
GRCh38
70
hg19
Lab
131
AMP-T2D consortium
assay_title!
WGBS
BIOSAMPLE
ASSAY
131 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
DNase-seq
Hi-C
pCHi-C
tissue
coronary artery
5
36
1
2
tibial artery
23
1
1
2
aorta
13
1
4
1
1
ascending aorta
16
2
1
thoracic aorta
16
1
2
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