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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
282
ChIP-seq
42
ATAC-seq
32
DNase-seq
24
total RNA-seq
6
single cell RNA-seq
4
small RNA-seq
3
pCHi-C
2
WGBS
1
FAIRE-seq
1
Hi-C
1
RRBS
Assay category
282
DNA binding
75
DNA accessibility
34
Transcription
3
DNA methylation
1
3D chromatin structure
Target of assay
238
histone
238
histone modification
132
narrow histone mark
106
broad histone mark
41
control
3
RNA binding protein
3
transcription factor
Date released
112
October, 2019
82
November, 2017
78
May, 2019
36
February, 2023
28
June, 2019
18
July, 2019
16
October, 2017
15
February, 2020
6
August, 2021
5
March, 2020
2
November, 2018
Available data
313
bam
292
bed narrowPeak
272
bigWig
178
bigBed narrowPeak
118
tagAlign
41
bed broadPeak
37
tsv
32
bed bed3+
32
bigBed broadPeak
12
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
398
Homo sapiens
Biosample type
398
tissue
66
cell line
48
primary cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
398
AMP
Genome assembly (visualization)
308
GRCh38
213
hg19
Lab
398
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
BIOSAMPLE
ASSAY
398 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
single cell RNA-seq
small RNA-seq
pCHi-C
WGBS
FAIRE-seq
Hi-C
RRBS
tissue
coronary artery
5
36
2
1
brain
20
1
14
1
1
tibial artery
23
1
2
1
layer of hippocampus
23
aorta
13
1
4
1
2
1
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