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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
296
total RNA-seq
190
ChIP-seq
100
ATAC-seq
12
DNase-seq
11
snATAC-seq
6
WGBS
6
single cell RNA-seq
5
Hi-C
4
MeRIP-seq
2
FAIRE-seq
2
RRBS
2
pCHi-C
2
small RNA-seq
Assay category
304
Transcription
190
DNA binding
125
DNA accessibility
8
DNA methylation
5
3D chromatin structure
Target of assay
127
histone
127
histone modification
77
broad histone mark
50
narrow histone mark
45
control
20
transcription factor
11
RNA binding protein
2
nucleotide modification
Date released
147
August, 2017
120
July, 2018
53
February, 2023
52
May, 2019
51
October, 2018
39
November, 2019
37
May, 2021
29
October, 2019
24
May, 2022
13
July, 2019
12
March, 2020
8
August, 2021
8
January, 2021
7
June, 2019
7
November, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
October, 2017
4
February, 2020
4
November, 2020
1
August, 2022
Available data
516
bam
443
bigWig
289
tsv
223
bed narrowPeak
213
fastq
124
bigBed narrowPeak
32
bed bed3+
25
bed broadPeak
16
tagAlign
11
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
Organism
631
Homo sapiens
Biosample type
638
tissue
383
primary cell
158
cell line
3
in vitro differentiated cells
Organ
547
connective tissue
505
pancreas
488
adipose tissue
361
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
608
AMP
30
T1D
Genome assembly (visualization)
491
GRCh38
483
hg19
Lab
575
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
638 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
single cell RNA-seq
Hi-C
MeRIP-seq
FAIRE-seq
RRBS
pCHi-C
small RNA-seq
tissue
islet of Langerhans
284
50
58
1
7
3
4
1
1
body of pancreas
3
35
4
4
2
2
coronary artery
1
5
36
2
pancreas
2
16
2
4
2
1
1
1
1
tibial artery
1
23
1
2
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