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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
844
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
844
DNA binding
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
185
control
89
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
195
October, 2019
174
August, 2017
111
May, 2019
82
November, 2017
76
April, 2019
63
October, 2018
50
May, 2020
46
December, 2017
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
699
bam
553
bigWig
534
bed narrowPeak
357
bigBed narrowPeak
238
tagAlign
205
fastq
35
bed broadPeak
26
bed bed3+
1
tagAlign bed3+
Organism
837
Homo sapiens
Biosample type
844
tissue
419
cell line
269
primary cell
187
in vitro differentiated cells
3
stem cell
Organ
209
brain
153
liver
109
pancreas
78
heart
70
blood vessel
70
vasculature
69
connective tissue
68
adipose tissue
66
limb
35
nerve
29
musculature of body
27
artery
26
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
842
AMP
2
T1D
Genome assembly (visualization)
528
GRCh38
507
hg19
Lab
844
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
844 results
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ChIP-seq
tissue
liver
144
islet of Langerhans
69
subcutaneous abdominal adipose tissue
36
tibial nerve
35
heart left ventricle
32
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