Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
809
ChIP-seq
258
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1227
Transcription
809
DNA binding
292
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
558
histone modification
557
histone
294
narrow histone mark
263
broad histone mark
187
control
89
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
256
August, 2017
238
October, 2019
229
August, 2021
193
May, 2020
120
July, 2018
111
May, 2019
95
February, 2023
77
July, 2019
76
April, 2019
76
November, 2017
66
May, 2022
63
October, 2018
47
September, 2023
46
December, 2017
40
March, 2020
40
May, 2021
40
November, 2019
25
February, 2020
19
April, 2020
19
October, 2017
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1884
bam
1710
bigWig
1076
tsv
923
bed narrowPeak
541
bigBed narrowPeak
362
fastq
238
tagAlign
bed broadPeak
203
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2498
Homo sapiens
Biosample type
2501
tissue
1034
primary cell
542
cell line
382
in vitro differentiated cells
10
stem cell
Organ
539
connective tissue
480
adipose tissue
477
pancreas
356
liver
241
heart
230
kidney
229
brain
158
bone element
125
blood vessel
125
vasculature
86
limb
68
artery
53
eye
41
nerve
37
musculature of body
24
spleen
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2404
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1606
GRCh38
1537
hg19
Lab
2191
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
target.investigated_as!
RNA binding protein
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
2501 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
298
63
66
7
4
3
1
1
4
1
adipose tissue
382
2
3
3
1
liver
167
144
20
1
3
1
1
1
1
kidney
49
26
75
64
6
1
1
1
bone element
84
+ See 159 more…
See all biosamples
Download