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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
748
total RNA-seq
735
ChIP-seq
198
ATAC-seq
174
single cell RNA-seq
171
DNase-seq
87
RNA microarray
24
pCHi-C
23
WGBS
17
snATAC-seq
14
small RNA-seq
12
Hi-C
9
RRBS
3
snDrop-seq
2
FAIRE-seq
Assay category
936
Transcription
735
DNA binding
388
DNA accessibility
32
DNA methylation
12
3D chromatin structure
Target of assay
520
histone modification
519
histone
277
narrow histone mark
242
broad histone mark
158
control
72
transcription factor
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
239
October, 2019
227
August, 2021
193
May, 2020
159
June, 2019
137
August, 2017
109
May, 2019
82
November, 2017
77
February, 2023
76
April, 2019
71
July, 2019
47
September, 2023
46
December, 2017
42
May, 2022
31
March, 2020
24
February, 2020
19
April, 2020
19
November, 2018
18
October, 2017
18
October, 2018
15
May, 2023
7
December, 2018
7
January, 2019
3
December, 2019
3
May, 2021
2
January, 2018
1
November, 2019
Available data
1463
bam
1345
bigWig
807
bed narrowPeak
801
tsv
485
bigBed narrowPeak
222
tagAlign
193
bed broadPeak
178
bed bed3+
170
bigBed broadPeak
157
fastq
151
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
5
bed bed3
1
tagAlign bed3+
Organism
2215
Homo sapiens
Biosample type
2217
tissue
732
primary cell
506
cell line
380
in vitro differentiated cells
10
stem cell
Organ
542
connective tissue
pancreas
483
adipose tissue
359
liver
298
kidney
268
heart
265
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
82
musculature of body
72
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2150
AMP
47
KPMP
19
LungMap
1
T1D
Genome assembly (visualization)
1419
GRCh38
1328
hg19
Lab
1968
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
1
Kyle Gaulton, UCSD
Audit category:
91
inconsistent ontology term
27
inconsistent control
8
audit script error
Audit category:
16
missing controlled_by
Audit category:
1
inconsistent control read length
target.investigated_as!
RNA binding protein
organ_slims!
pancreas
BIOSAMPLE
ASSAY
2217 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
small RNA-seq
Hi-C
RRBS
snDrop-seq
FAIRE-seq
tissue
adipose tissue
382
2
3
1
3
liver
167
144
20
1
2
1
3
1
1
1
kidney
49
26
75
64
13
6
1
1
1
bone element
84
heart left ventricle
3
32
2
18
3
1
4
1
1
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