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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
312
ChIP-seq
171
single cell RNA-seq
87
RNA microarray
52
ATAC-seq
27
WGBS
25
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
1218
Transcription
312
DNA binding
71
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
187
control
108
histone
108
histone modification
58
narrow histone mark
50
broad histone mark
19
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
537
February, 2021
218
August, 2017
166
May, 2020
165
August, 2021
120
July, 2018
91
October, 2019
70
July, 2019
47
September, 2023
40
May, 2021
38
March, 2020
32
February, 2023
29
October, 2018
28
May, 2022
25
February, 2020
24
November, 2017
22
May, 2019
20
November, 2019
15
April, 2019
15
May, 2023
12
December, 2017
11
October, 2017
9
November, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1905
bam
1770
bigWig
1076
tsv
bed narrowPeak
559
bigBed narrowPeak
375
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1772
Homo sapiens
Biosample type
1774
tissue
793
primary cell
262
in vitro differentiated cells
258
cell line
8
stem cell
Organ
534
connective tissue
475
adipose tissue
382
pancreas
248
liver
150
bone element
146
kidney
140
heart
73
brain
33
blood vessel
33
vasculature
31
musculature of body
30
limb
26
eye
16
nerve
11
artery
11
spleen
8
skeleton
5
gonad
5
ovary
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1698
AMP
47
KPMP
29
T1D
LungMap
Genome assembly (visualization)
978
hg19
976
GRCh38
Lab
1583
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
22
missing controlled_by
target.investigated_as!
chromatin remodeller
award.project!
LungMap
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
1774 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
RNA microarray
ATAC-seq
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
292
51
6
31
4
7
3
1
4
adipose tissue
382
1
2
3
1
liver
167
63
1
3
1
1
1
1
kidney
49
7
64
11
6
1
1
bone element
84
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