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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
103
total RNA-seq
29
ATAC-seq
10
DNase-seq
10
WGBS
3
RRBS
2
FAIRE-seq
Assay category
218
DNA binding
103
Transcription
41
DNA accessibility
13
DNA methylation
Target of assay
79
transcription factor
74
histone modification
73
histone
67
control
45
broad histone mark
28
narrow histone mark
15
RNA binding protein
3
other context
3
other post-translational modification
chromatin remodeller
Date released
175
August, 2017
58
October, 2018
46
December, 2017
26
November, 2018
24
May, 2022
17
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
1
March, 2019
Available data
1905
bam
1730
bigWig
1076
tsv
942
bed narrowPeak
559
bigBed narrowPeak
375
fastq
238
tagAlign
213
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
368
Homo sapiens
Biosample type
408
primary cell
397
cell line
375
tissue
138
in vitro differentiated cells
4
stem cell
Organ
213
pancreas
81
liver
43
adipose tissue
43
connective tissue
24
spleen
12
brain
2
musculature of body
Project
375
AMP
Genome assembly (visualization)
292
hg19
278
GRCh38
Lab
349
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
25
inconsistent control
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
375 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
RRBS
FAIRE-seq
tissue
islet of Langerhans
28
103
20
1
1
liver
65
2
1
1
body of pancreas
33
4
2
2
spleen
20
1
1
2
pancreas
16
2
1
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