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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
38
ATAC-seq
7
total RNA-seq
6
single cell RNA-seq
5
DNase-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
57
DNA binding
43
DNA accessibility
13
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
narrow histone mark
control
3
RNA binding protein
3
transcription factor
Date released
39
May, 2019
35
February, 2023
21
October, 2019
7
July, 2019
6
August, 2021
3
February, 2020
3
June, 2019
3
March, 2020
Available data
100
bed narrowPeak
71
bam
70
bigWig
62
bigBed narrowPeak
14
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
117
Homo sapiens
Biosample type
117
tissue
64
cell line
28
primary cell
Organ
523
connective tissue
476
pancreas
464
adipose tissue
315
liver
293
kidney
257
heart
240
brain
158
bone element
117
blood vessel
117
vasculature
105
limb
78
musculature of body
66
artery
56
eye
32
nerve
20
lung
18
ureter
17
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
117
AMP
Genome assembly (visualization)
105
GRCh38
70
hg19
Lab
117
AMP-T2D consortium
target.investigated_as!
control
BIOSAMPLE
ASSAY
117 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
3
36
1
2
tibial artery
18
1
1
2
aorta
11
1
4
2
1
1
ascending aorta
13
2
1
thoracic aorta
12
1
2
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