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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
89
ChIP-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
3
snDrop-seq
2
MeRIP-seq
Assay category
1227
Transcription
470
DNA accessibility
89
DNA binding
38
DNA methylation
16
3D chromatin structure
Target of assay
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
163
June, 2019
143
May, 2020
131
August, 2017
120
July, 2018
95
February, 2023
77
July, 2019
66
May, 2022
47
October, 2019
47
September, 2023
40
May, 2021
40
November, 2019
38
March, 2020
31
December, 2017
25
February, 2020
23
November, 2018
19
April, 2020
15
May, 2023
15
October, 2018
8
January, 2021
8
October, 2017
6
April, 2018
6
April, 2019
5
March, 2019
4
May, 2019
3
December, 2018
3
December, 2019
2
January, 2018
2
November, 2020
1
August, 2022
Available data
1274
bam
1245
bigWig
1076
tsv
459
bed narrowPeak
249
bigBed narrowPeak
236
fastq
190
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1955
Homo sapiens
Biosample type
1957
tissue
816
primary cell
541
cell line
245
in vitro differentiated cells
7
stem cell
Organ
490
connective tissue
432
adipose tissue
403
pancreas
273
kidney
245
liver
197
heart
158
bone element
63
blood vessel
63
vasculature
56
brain
56
limb
54
eye
53
musculature of body
46
artery
20
lung
18
ureter
16
skeleton
15
epithelium
11
spleen
8
nerve
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1862
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1357
GRCh38
1314
hg19
Lab
1647
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
target.investigated_as!
control
histone modification
BIOSAMPLE
ASSAY
1957 results
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total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
ChIP-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
snDrop-seq
MeRIP-seq
tissue
islet of Langerhans
298
68
1
7
7
4
3
1
1
2
adipose tissue
382
3
3
1
liver
167
20
2
1
37
3
1
1
1
1
kidney
49
75
13
64
1
6
1
1
1
bone element
84
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