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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1030
total RNA-seq
275
ChIP-seq
249
ATAC-seq
178
DNase-seq
118
single cell RNA-seq
87
RNA microarray
27
WGBS
24
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
8
snATAC-seq
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1164
Transcription
439
DNA accessibility
275
DNA binding
38
DNA methylation
16
3D chromatin structure
Target of assay
591
histone modification
histone
307
narrow histone mark
283
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
166
May, 2020
163
June, 2019
161
August, 2017
120
July, 2018
77
February, 2023
77
July, 2019
74
October, 2019
66
May, 2022
44
October, 2018
43
December, 2017
40
November, 2019
39
May, 2021
36
March, 2020
26
May, 2019
26
November, 2018
25
February, 2020
20
April, 2019
15
May, 2023
12
November, 2017
11
October, 2017
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1442
bam
1246
bigWig
1076
tsv
460
bed narrowPeak
304
fastq
249
bigBed narrowPeak
193
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
157
txt
64
xls
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2048
Homo sapiens
Biosample type
2050
tissue
615
cell line
406
primary cell
282
in vitro differentiated cells
6
stem cell
Organ
514
connective tissue
456
adipose tissue
404
pancreas
292
liver
232
kidney
213
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
2050
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1361
GRCh38
1318
hg19
Lab
1831
AMP-T2D consortium
142
Katalin Susztak, Upenn
40
Karen Mohlke, UNC
25
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
target.investigated_as!
histone
BIOSAMPLE
ASSAY
2050 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
snATAC-seq
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
1
3
3
1
islet of Langerhans
291
20
57
1
4
3
1
1
1
4
liver
167
81
20
2
1
3
1
1
1
1
kidney
49
7
75
13
17
1
1
6
1
bone element
84
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