Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
217
ATAC-seq
186
ChIP-seq
174
single cell RNA-seq
136
total RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
310
Transcription
246
DNA accessibility
186
DNA binding
22
DNA methylation
16
3D chromatin structure
Target of assay
187
control
histone
106
histone modification
56
narrow histone mark
50
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
229
August, 2021
101
February, 2021
95
February, 2023
59
October, 2019
47
September, 2023
46
May, 2022
42
August, 2017
29
March, 2020
29
October, 2018
25
February, 2020
23
May, 2020
22
May, 2019
21
November, 2019
19
April, 2020
15
April, 2019
15
May, 2023
14
July, 2019
12
December, 2017
12
November, 2017
8
January, 2021
6
September, 2017
5
March, 2019
4
December, 2018
4
July, 2018
4
November, 2020
3
December, 2019
3
November, 2018
3
October, 2017
2
May, 2021
1
August, 2022
1
January, 2019
Available data
1442
bam
bigWig
1076
tsv
460
bed narrowPeak
304
fastq
249
bigBed narrowPeak
193
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
157
txt
64
xls
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
896
Homo sapiens
Biosample type
899
tissue
468
primary cell
139
cell line
101
in vitro differentiated cells
7
stem cell
Organ
208
kidney
156
heart
124
pancreas
100
bone element
76
liver
63
blood vessel
63
vasculature
51
eye
46
artery
42
brain
35
adipose tissue
35
connective tissue
30
limb
20
lung
19
musculature of body
16
skeleton
15
epithelium
12
nerve
9
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
804
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
144
GRCh38
106
hg19
Lab
608
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
88
inconsistent ontology term
9
audit script error
target.investigated_as!
histone
files.file_type!
bigWig
BIOSAMPLE
ASSAY
899 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
75
7
64
49
6
1
1
islet of Langerhans
65
13
32
7
4
3
1
4
bone element
84
liver
43
1
20
1
1
1
3
coronary artery
35
2
1
+ See 91 more…
See all biosamples
Download