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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
177
DNase-seq
89
ChIP-seq
43
ATAC-seq
16
WGBS
16
small RNA-seq
4
FAIRE-seq
Assay category
917
Transcription
224
DNA accessibility
89
DNA binding
16
DNA methylation
Target of assay
487
histone modification
histone
253
narrow histone mark
233
broad histone mark
88
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
444
February, 2021
163
June, 2019
143
May, 2020
119
August, 2017
116
July, 2018
63
July, 2019
38
May, 2021
31
December, 2017
23
November, 2018
20
May, 2022
19
November, 2019
15
October, 2018
15
October, 2019
9
March, 2020
8
October, 2017
6
April, 2018
5
April, 2019
4
May, 2019
3
December, 2018
2
January, 2018
Available data
1442
bam
1246
bigWig
1076
tsv
460
bed narrowPeak
304
fastq
249
bigBed narrowPeak
193
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
157
txt
64
xls
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1246
Homo sapiens
Biosample type
1246
tissue
485
cell line
383
primary cell
181
in vitro differentiated cells
1
stem cell
Organ
479
connective tissue
421
adipose tissue
308
pancreas
216
liver
71
kidney
58
bone element
57
heart
43
limb
39
brain
38
musculature of body
18
ureter
16
blood vessel
16
vasculature
10
spleen
7
artery
7
nerve
3
eye
Project
1246
AMP
Genome assembly (visualization)
1217
GRCh38
1212
hg19
Lab
1225
AMP-T2D consortium
20
Karen Mohlke, UNC
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
18
missing controlled_by
target.investigated_as!
histone
BIOSAMPLE
ASSAY
1246 results
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total RNA-seq
DNase-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
266
1
7
3
1
liver
147
2
38
20
1
bone tissue
58
heart
4
18
1
1
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