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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1030
total RNA-seq
258
ChIP-seq
252
ATAC-seq
174
single cell RNA-seq
142
DNase-seq
87
RNA microarray
28
snATAC-seq
26
WGBS
25
pCHi-C
16
small RNA-seq
12
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1220
Transcription
426
DNA accessibility
258
DNA binding
37
DNA methylation
12
3D chromatin structure
Target of assay
544
histone modification
histone
294
narrow histone mark
249
broad histone mark
170
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
539
February, 2021
229
August, 2021
166
May, 2020
161
August, 2017
131
June, 2019
120
July, 2018
95
February, 2023
72
July, 2019
66
May, 2022
48
October, 2019
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
November, 2018
25
May, 2019
22
February, 2020
20
April, 2019
19
April, 2020
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1376
bam
1203
bigWig
1069
tsv
416
bed narrowPeak
304
fastq
213
bigBed narrowPeak
157
bed bed3+
157
txt
142
bed broadPeak
140
bigBed broadPeak
64
xls
52
tagAlign
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2069
Homo sapiens
Biosample type
2072
tissue
851
primary cell
624
cell line
282
in vitro differentiated cells
8
stem cell
Organ
514
connective tissue
456
adipose tissue
432
pancreas
292
liver
279
kidney
213
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1977
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1312
GRCh38
1270
hg19
Lab
1760
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
target.investigated_as!
histone
organ_slims!
limb
BIOSAMPLE
ASSAY
2072 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
20
68
1
7
4
3
1
1
4
adipose tissue
382
1
3
3
1
liver
167
81
20
1
2
3
1
1
1
1
kidney
49
7
75
64
13
6
1
1
1
bone element
84
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