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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
867
total RNA-seq
239
ATAC-seq
189
ChIP-seq
174
DNase-seq
173
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
24
pCHi-C
23
WGBS
15
Hi-C
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1053
Transcription
445
DNA accessibility
189
DNA binding
33
DNA methylation
15
3D chromatin structure
Target of assay
histone
523
histone modification
265
narrow histone mark
258
broad histone mark
141
control
50
transcription factor
21
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
544
February, 2021
229
August, 2021
163
June, 2019
139
August, 2017
120
July, 2018
95
February, 2023
73
October, 2019
69
July, 2019
47
September, 2023
44
October, 2018
40
May, 2021
40
November, 2019
35
March, 2020
26
May, 2019
26
May, 2022
24
February, 2020
20
April, 2019
19
April, 2020
19
November, 2018
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1203
bam
1030
bigWig
922
tsv
396
bed narrowPeak
238
fastq
210
bigBed narrowPeak
187
bed bed3+
175
bed broadPeak
173
bigBed broadPeak
157
txt
64
xls
26
tagAlign
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
Organism
1850
Homo sapiens
Biosample type
1853
tissue
840
primary cell
279
in vitro differentiated cells
241
cell line
8
stem cell
Organ
514
connective tissue
456
adipose tissue
432
pancreas
liver
279
kidney
213
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1758
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1164
GRCh38
1099
hg19
Lab
1581
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
9
audit script error
Audit category:
18
missing controlled_by
target.investigated_as!
histone
organ_slims!
liver
BIOSAMPLE
ASSAY
1853 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
68
20
1
7
4
3
1
1
4
adipose tissue
382
3
1
1
3
kidney
49
75
7
13
64
6
1
1
1
bone element
84
bone tissue
58
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