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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ATAC-seq
174
single cell RNA-seq
130
total RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
18
ChIP-seq
16
Hi-C
11
RRBS
10
WGBS
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
304
Transcription
225
DNA accessibility
21
DNA methylation
18
DNA binding
16
3D chromatin structure
Target of assay
127
histone
histone modification
66
narrow histone mark
61
broad histone mark
20
control
2
nucleotide modification
Date released
229
August, 2021
95
February, 2023
93
February, 2021
47
September, 2023
42
May, 2022
33
October, 2019
31
March, 2020
30
August, 2017
25
February, 2020
19
April, 2020
15
May, 2023
13
July, 2019
8
January, 2021
4
July, 2018
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
2
May, 2021
2
October, 2017
1
August, 2022
1
November, 2019
Available data
bam
1245
bigWig
1076
tsv
459
bed narrowPeak
303
fastq
249
bigBed narrowPeak
193
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
157
txt
64
xls
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
701
Homo sapiens
Biosample type
703
tissue
445
primary cell
77
cell line
70
in vitro differentiated cells
7
stem cell
Organ
201
kidney
140
heart
92
bone element
62
pancreas
53
liver
51
eye
46
blood vessel
46
vasculature
39
artery
20
lung
19
musculature of body
18
brain
17
adipose tissue
17
connective tissue
15
epithelium
8
skeleton
7
limb
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
608
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
114
GRCh38
83
hg19
Lab
416
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
target.investigated_as!
histone modification
files.file_type!
bam
BIOSAMPLE
ASSAY
703 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
ChIP-seq
Hi-C
RRBS
WGBS
MeRIP-seq
snDrop-seq
DNase-seq
tissue
kidney
75
64
49
6
1
1
bone element
84
islet of Langerhans
30
26
7
4
6
3
1
4
liver
20
1
20
1
3
1
1
3
coronary artery
35
1
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