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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
274
ChIP-seq
258
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
DNase-seq
Assay category
1227
Transcription
292
DNA accessibility
274
DNA binding
38
DNA methylation
16
3D chromatin structure
Target of assay
histone modification
557
histone
294
narrow histone mark
263
broad histone mark
187
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
166
May, 2020
160
August, 2017
120
July, 2018
95
February, 2023
77
July, 2019
70
October, 2019
66
May, 2022
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
May, 2019
25
February, 2020
20
April, 2019
19
April, 2020
17
November, 2018
15
May, 2023
12
November, 2017
10
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1441
bam
1245
bigWig
1076
tsv
459
bed narrowPeak
303
fastq
249
bigBed narrowPeak
193
bed bed3+
bed broadPeak
176
bigBed broadPeak
157
txt
64
xls
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1963
Homo sapiens
Biosample type
1966
tissue
818
primary cell
579
cell line
281
in vitro differentiated cells
8
stem cell
Organ
512
connective tissue
454
adipose tissue
424
pancreas
288
liver
211
kidney
186
heart
158
bone element
74
blood vessel
74
vasculature
54
brain
51
eye
49
artery
37
limb
25
musculature of body
20
lung
18
spleen
17
nerve
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1871
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1183
GRCh38
1156
hg19
Lab
1656
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
target.investigated_as!
histone modification
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
1966 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
298
20
66
7
4
3
1
1
4
1
adipose tissue
382
1
3
3
1
liver
167
80
20
1
3
1
1
1
1
kidney
49
7
75
64
6
1
1
1
bone element
84
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