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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
DNase-seq
25
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
32
DNA accessibility
25
DNA binding
21
Transcription
1
DNA methylation
Target of assay
184
histone
histone modification
114
narrow histone mark
70
broad histone mark
25
control
Date released
25
June, 2019
12
February, 2020
12
November, 2017
11
July, 2019
9
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
63
bam
39
bigWig
28
bed narrowPeak
28
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
23
tsv
19
tagAlign
5
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
81
Homo sapiens
Biosample type
81
tissue
18
primary cell
Organ
514
connective tissue
456
adipose tissue
432
pancreas
291
liver
279
kidney
213
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
81
AMP
Genome assembly (visualization)
38
GRCh38
29
hg19
Lab
81
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
81 results
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DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
tissue
brain
14
3
1
1
1
cerebellum (Hemisphere)
1
2
1
1
1
frontal cortex
2
2
1
1
caudate nucleus
1
2
1
temporal lobe
2
1
1
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