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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
536
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
536
DNA binding
470
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
585
histone modification
584
histone
narrow histone mark
279
broad histone mark
187
control
71
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
215
August, 2017
166
May, 2020
163
June, 2019
120
July, 2018
113
October, 2019
95
February, 2023
82
May, 2019
77
July, 2019
66
May, 2022
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
November, 2018
25
February, 2020
19
April, 2020
18
October, 2017
15
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1643
bam
1458
bigWig
1076
tsv
691
bed narrowPeak
451
bigBed narrowPeak
327
fastq
197
bed broadPeak
188
bed bed3+
176
bigBed broadPeak
157
txt
125
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2399
Homo sapiens
Biosample type
2406
tissue
952
primary cell
631
cell line
334
in vitro differentiated cells
9
stem cell
Organ
522
connective tissue
466
pancreas
464
adipose tissue
317
liver
289
kidney
250
heart
158
bone element
148
brain
115
blood vessel
115
vasculature
107
limb
73
musculature of body
67
artery
54
eye
35
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2311
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1562
GRCh38
1495
hg19
Lab
2094
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
narrow histone mark
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
2406 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
27
68
1
7
4
3
1
1
4
adipose tissue
382
1
3
3
1
liver
167
103
20
2
1
3
1
1
1
1
kidney
49
17
75
13
64
6
1
1
1
bone element
84
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