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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
721
ChIP-seq
582
total RNA-seq
254
ATAC-seq
176
DNase-seq
174
single cell RNA-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
770
Transcription
721
DNA binding
462
DNA accessibility
32
DNA methylation
16
3D chromatin structure
Target of assay
560
histone modification
559
histone
296
narrow histone mark
263
broad histone mark
163
control
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
240
October, 2019
228
August, 2021
216
August, 2017
193
May, 2020
162
June, 2019
120
July, 2018
111
May, 2019
101
February, 2021
94
February, 2023
82
November, 2017
74
April, 2019
67
July, 2019
66
May, 2022
47
September, 2023
41
October, 2018
40
May, 2021
39
March, 2020
39
November, 2019
23
February, 2020
22
October, 2017
19
April, 2020
18
November, 2018
17
December, 2017
14
May, 2023
8
January, 2021
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1337
bam
1180
bigWig
866
bed narrowPeak
619
tsv
491
bigBed narrowPeak
272
fastq
230
tagAlign
210
bed broadPeak
190
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2110
Homo sapiens
Biosample type
2118
tissue
1040
primary cell
301
cell line
270
in vitro differentiated cells
9
stem cell
Organ
connective tissue
488
pancreas
471
adipose tissue
322
liver
298
kidney
266
heart
265
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
82
musculature of body
72
artery
56
eye
43
nerve
20
lung
19
spleen
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2021
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1268
GRCh38
1202
hg19
Lab
1806
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
9
audit script error
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
transcription factor
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
2118 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
63
298
68
1
7
4
3
1
1
4
liver
108
167
20
2
1
1
3
1
1
1
kidney
26
49
75
13
64
6
1
1
1
bone element
84
heart left ventricle
30
3
2
3
18
1
4
1
1
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