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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
830
ChIP-seq
Assay category
830
DNA binding
Target of assay
830
histone modification
829
histone
424
narrow histone mark
405
broad histone mark
222
control
99
transcription factor
33
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
189
October, 2019
162
August, 2017
118
May, 2021
92
May, 2019
73
November, 2017
60
April, 2019
32
September, 2018
30
October, 2018
27
May, 2020
19
June, 2019
12
October, 2017
6
January, 2019
5
December, 2017
3
August, 2021
2
March, 2020
Available data
717
bigWig
701
bed narrowPeak
669
bam
359
bigBed narrowPeak
284
tagAlign
147
fastq
51
bed broadPeak
16
bigBed broadPeak
15
bed bed3+
1
tagAlign bed3+
Organism
824
Homo sapiens
Biosample type
593
tissue
237
primary cell
112
in vitro differentiated cells
38
cell line
2
stem cell
Organ
187
brain
131
pancreas
73
liver
71
vasculature
70
blood vessel
66
epithelium
62
heart
49
limb
41
connective tissue
33
musculature of body
32
adipose tissue
30
kidney
24
nerve
20
artery
15
vein
6
spleen
4
gonad
4
ovary
3
eye
1
lymph node
1
pituitary gland
Project
744
AMP
86
T1D
Genome assembly (visualization)
668
hg19
657
GRCh38
Lab
716
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
19
inconsistent ontology term
Audit category:
52
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
830 results
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Clear Filters
ChIP-seq
tissue
liver
65
islet of Langerhans
51
subcutaneous abdominal adipose tissue
31
heart left ventricle
24
tibial nerve
24
+ See 99 more…
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
30
pancreatic endocrine cell
23
endothelial cell of umbilical vein
15
pancreatic ductal cell
13
+ See 18 more…
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